conda create -n hmftools_env
conda activate hmftools_env
conda install -c conda-forge squashfs-tools
conda install -c conda-forge singularity=3.8.6
conda install -c conda-forge nextflow
conda install -c conda-forge maven
conda install r-base=4.3.1
conda install r-bioconductor r-ggplot2
R
install.packages("VariantAnnotator")
install.packages("copynumber",repos=NULL,type="source")