{"id":463,"date":"2025-02-25T19:58:34","date_gmt":"2025-02-25T11:58:34","guid":{"rendered":"https:\/\/www.kz-hub.tech\/?p=463"},"modified":"2025-03-10T15:55:26","modified_gmt":"2025-03-10T07:55:26","slug":"msisensor-pro","status":"publish","type":"post","link":"https:\/\/www.kz-hub.tech\/index.php\/2025\/02\/25\/msisensor-pro\/","title":{"rendered":"msisensor-pro"},"content":{"rendered":"<p>\u4f7f\u7528\u8bf4\u660e\u4e66: <a href=\"https:\/\/github.com\/xjtu-omics\/msisensor-pro\/blob\/master\/docs\/4_command.md\">https:\/\/github.com\/xjtu-omics\/msisensor-pro\/blob\/master\/docs\/4_command.md<\/a><\/p>\n<h3>\u9996\u5148\u626b\u63cf\u53c2\u8003\u57fa\u56e0\u7ec4\u83b7\u53d6\u53c2\u8003\u57fa\u56e0\u7ec4\u7684msi\u533a\u57df<\/h3>\n<pre><code class=\"language-bash\">conda activate msisensor-pro\n\nmsisensor-pro scan -d gencode_GRCh38.p14.genome.fa -o gencode_GRCh38.p14.genome.msisensorpro.scan.regions<\/code><\/pre>\n<h3>\u63a5\u7740\u6784\u5efaWES\u8fd0\u884cmsi\u7684\u811a\u672c<\/h3>\n<pre><code>perl -ne &#039;chomp; next if \/^$\/; @a = split \/\\t\/; print &quot;msisensor-pro msi -d \/data02\/zhangmengmeng\/database\/hg38\/gencode_GRCh38.p14.genome.msisensorpro.scan.regions -n ..\/align\/$a[1]_bqsr.bam -t ..\/align\/$a[0]_bqsr.bam -o $a[0] -c 20 &amp;&amp; echo $a[0] msisensor-pro ok\\n&quot;&#039; sample_pair.txt &gt; RunMsiSensorPro.sh<\/code><\/pre>\n<h1>\u5408\u5e76\u6587\u4ef6<\/h1>\n<pre><code>awk &#039;FNR==1 &amp;&amp; NR==1 {print &quot;sample_id\\t&quot;$0} FNR&gt;1 {print FILENAME&quot;\\t&quot;$0}&#039; FETB*-*-? &gt; All.msi<\/code><\/pre>\n","protected":false},"excerpt":{"rendered":"<p>\u4f7f\u7528\u8bf4\u660e\u4e66: https:\/\/github.com\/xjtu-omics\/msisensor-pro\/blob&#8230;<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[1],"tags":[],"class_list":["post-463","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/www.kz-hub.tech\/index.php\/wp-json\/wp\/v2\/posts\/463","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.kz-hub.tech\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.kz-hub.tech\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.kz-hub.tech\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.kz-hub.tech\/index.php\/wp-json\/wp\/v2\/comments?post=463"}],"version-history":[{"count":4,"href":"https:\/\/www.kz-hub.tech\/index.php\/wp-json\/wp\/v2\/posts\/463\/revisions"}],"predecessor-version":[{"id":505,"href":"https:\/\/www.kz-hub.tech\/index.php\/wp-json\/wp\/v2\/posts\/463\/revisions\/505"}],"wp:attachment":[{"href":"https:\/\/www.kz-hub.tech\/index.php\/wp-json\/wp\/v2\/media?parent=463"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.kz-hub.tech\/index.php\/wp-json\/wp\/v2\/categories?post=463"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.kz-hub.tech\/index.php\/wp-json\/wp\/v2\/tags?post=463"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}